#    This program is free software: you can redistribute it and/or modify
#    it under the terms of the GNU General Public License as published by
#    the Free Software Foundation, either version 3 of the License, or
#    (at your option) any later version.
#
#    This program is distributed in the hope that it will be useful,
#    but WITHOUT ANY WARRANTY; without even the implied warranty of
#    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
#    GNU General Public License for more details.
#
#    You should have received a copy of the GNU General Public License
#    along with this program.  If not, see <http://www.gnu.org/licenses/>.
#
#    Code base of Animesh Sharma [ sharma.animesh@gmail.com ]

perl -MBio::SeqIO -e ' $informat="genbank"; $outformat="fasta"; $count = 0; for $infile (@ARGV) { $in = Bio::SeqIO->newFh(-file => $infile , -format => $informat); $out = Bio::SeqIO->newFh(-format => $outformat); while (<$in>) { print $out $_; $count++; } } warn "Translated $count sequences from $informat to $outformat format\n" ' @ARGV[1] @ARGV[2]

